PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0256s00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 261aa    MW: 28801.4 Da    PI: 4.5995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0256s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-20186235255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++ a++k++g
  Vang0256s00120.1 186 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDVAALKFKG 235
                       7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.6E-33185244IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23186244IPR016177DNA-binding domain
PROSITE profilePS5103225.462186243IPR001471AP2/ERF domain
SMARTSM003801.8E-37186249IPR001471AP2/ERF domain
PfamPF008479.6E-14186235IPR001471AP2/ERF domain
CDDcd000182.48E-24186244No hitNo description
PRINTSPR003671.1E-11187198IPR001471AP2/ERF domain
PRINTSPR003671.1E-11209225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MHPVPSPIEE HVIPPPPTGR SGKGSCSASA IPXDDMDDGS PCLLYILEED EMVLVARGTE  60
FRSATVCHGM QLLEDEVKVS VDEMIIPDAS VPLSTEEIFI VEQVYKSFIT WPKFLVKPVS  120
DPSTQAQQKI PLSEDDPLSS LHLLANILDD NPLEVEYDAN VFGTGSEVPI YLNSQDVRNA  180
DLRKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAAMAYDVAA LKFKGNKAKL  240
NFPERVAVPP PSPETTTTIS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27183246266ATERF1
3gcc_A4e-27183246266ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-164AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514305.14e-65PREDICTED: uncharacterized protein LOC106772423 isoform X2
RefseqXP_014514304.15e-65PREDICTED: uncharacterized protein LOC106772423 isoform X1
RefseqXP_014511613.12e-64PREDICTED: uncharacterized protein LOC106770310
TrEMBLA0A0L9VK621e-104A0A0L9VK62_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-32ERF family protein